PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 234aa    MW: 27265.3 Da    PI: 6.8554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22881.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G ++W+  ++  g+ R++k+c++rw +yl
       KHN22881.1 14 KGAWSEEEDKRLMAYVERHGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                     79********************************************97 PP

2Myb_DNA-binding56.65.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E+++++d++k++G++ W++Ia+ ++ gRt++++k++w+++l
       KHN22881.1  67 RGNYTQKEEQIIKDLHKKHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 112
                      899*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-24864IPR009057Homeodomain-like
PROSITE profilePS5129418.174961IPR017930Myb domain
SuperFamilySSF466893.49E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002495.6E-161461IPR001005SANT/Myb domain
CDDcd001673.27E-91661No hitNo description
PROSITE profilePS5129426.40662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2665114IPR009057Homeodomain-like
SMARTSM007174.0E-1766114IPR001005SANT/Myb domain
PfamPF002494.3E-1667112IPR001005SANT/Myb domain
CDDcd001672.98E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVRAPYFDKN GIKKGAWSEE EDKRLMAYVE RHGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQIIKD LHKKHGNKWS LIAENLPGRT DNEIKNYWHS HLKKFLKGNE  120
NTPCDDDDEL KSTECKEFER SMNKAHSADS HHILESSVSI SSETSYTEGN SPSFSSSHTT  180
ESSTLSKEED SVVSWQTMDV LSSNFWTEPF ISENALNQDY FPISSYGTEP FFLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540874.11e-176PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH41e-53MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0B2QNA21e-177A0A0B2QNA2_GLYSO; Myb-related protein Myb4
STRINGGLYMA12G11490.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-54myb domain protein 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]